PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_17.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family TCP
Protein Properties Length: 371aa    MW: 41374.3 Da    PI: 9.8724
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_17.1genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP122.54.7e-38712242137
                         TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..............ssssa 70 
                                  g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWL+++a  ai el++               + +++
  evm.model.supercontig_17.1  71 SGGKDRHSKVWTSKGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLIKAASDAIAELPSInsafpdtpkdekrvDGDPN 153
                                 689************************************************************99999876666665544444 PP

                         TCP  71 seceaesssssasnsssgkaaksaakskksqksaasalnlak....esrakarararertrekmriknkln 137
                                  + ++ +++++++n++++ +++++a+s++s++s++s l+l++      r+kar rarer ++++  +n++n
  evm.model.supercontig_17.1 154 YQQNQTQNQNQNQNQTQNLSMSKSACSSNSETSKNSGLSLSRseirVNRNKARDRARERVAKEKESNNHQN 224
                                 4445666666666666668888888999999999999999986444556*********6555544444443 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.6E-4172218IPR005333Transcription factor, TCP
PROSITE profilePS5136931.10573131IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.035199217IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:1903508Biological Processpositive regulation of nucleic acid-templated transcription
GO:2000306Biological Processpositive regulation of photomorphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MEVEEIQTHA CKFPRVGNGR KESNKLGQRE SEQQYPDDED DRGLIKRVSN SNSSNIGGWH  60
HSRIIRVSRA SGGKDRHSKV WTSKGLRDRR VRLSVTTAIQ FYDLQDRLGY DQPSKAVEWL  120
IKAASDAIAE LPSINSAFPD TPKDEKRVDG DPNYQQNQTQ NQNQNQNQTQ NLSMSKSACS  180
SNSETSKNSG LSLSRSEIRV NRNKARDRAR ERVAKEKESN NHQNANPISQ NSSFTELLTA  240
GIHTQNPTAE ANLFHKGRQW STTGTPMDYF TSGLVGPSSR THQSSGFTGQ IQLGSPQIPP  300
FNSNSSSLCL TPEVSFSYRR TKCTLLYGTP PADQNHHHHH QFSPGFDGRL QLCYGDGSRQ  360
HSDHKGKGKN *
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00006PBMTransfer from 493022Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015875888.11e-124PREDICTED: transcription factor TCP2
RefseqXP_015875894.11e-124PREDICTED: transcription factor TCP2
RefseqXP_015875904.11e-124PREDICTED: transcription factor TCP2
RefseqXP_015875913.11e-124PREDICTED: transcription factor TCP2
SwissprotQ93V439e-67TCP2_ARATH; Transcription factor TCP2
TrEMBLA0A067L0H71e-121A0A067L0H7_JATCU; TCP transcription factor BRC1
STRINGVIT_10s0003g03910.t011e-119(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM76152539
Representative plantOGRP18015163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.21e-65TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2